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Table 1 Results of the PAPerFly chiptigs analysis from mouse ESC ChIP-seq

From: PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction

TF

40%

50%

60%

70%

80%

90%

CTCF

0.503035

0.495266

0.439670

0.350571

0.201262

0.096140

E2f1

0.869511

0.854042

0.837325

0.804391

0.773703

0.725798

Esrrb

0.863810

0.840952

0.805714

0.780476

0.747143

0.699048

Klf4

0.813272

0.811728

0.774691

0.716049

0.621914

0.524691

Nanog

0.676176

0.666924

0.636083

0.576715

0.376253

0.294526

Oct4

0.847377

0.847377

0.798092

0.720191

0.645469

0.588235

STAT3

0.983392

0.978147

0.966783

0.952797

0.925699

0.897727

Smad1

0.250792

0.247625

0.200127

0.132996

0.072198

0.039265

Sox2

0.564948

0.558763

0.523711

0.472165

0.439175

0.391753

Suz12

0.839806

0.839806

0.830097

0.815534

0.786408

0.786408

Tcfcp2I1

0.926601

0.920374

0.913701

0.908808

0.895907

0.876335

Zfx

0.950083

0.934276

0.900166

0.836938

0.763727

0.677205

c-Myc

0.919619

0.919619

0.910082

0.900545

0.877384

0.858311

n-Myc

0.814246

0.756983

0.685754

0.631285

0.575419

0.530726

p300

0.909498

0.894012

0.833448

0.723331

0.631796

0.540950

  1. The columns correspond to different mapping cutoffs—the lowest possible portion of a mapped subsequence of a PAPerFly chiptig to the mouse genome. The fraction is calculated from all sufficiently long PAPerFly chiptigs
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BMC Bioinformatics

ISSN: 1471-2105

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