Table 1 ROAST performance in identifying and fixing different types of simulated errors using simulated RNA-seq data
From: Roast: a tool for reference-free optimization of supertranscriptome assemblies
Organism | Incomplete supertranscript | Fragmented supertranscript | False chimera | Local mis-assembly | |||
|---|---|---|---|---|---|---|---|
Missing sequence | Unsupported insertion | Trans-location | Inversion | ||||
Human | 174 (87) | 194 (97) | 174 (87) | 48 (96)Â Â | 50 (100)Â Â | 49 (98) | 49 (98) |
Mouse | 172 (86) | 196 (98) | 167 (84) | 50 (100) | 49 (98)Â Â | 48 (96) | 49 (98) |
Chicken | 179 (90) | 196 (98) | 176 (88) | 50 (100) | 49 (98)Â Â | 49 (98) | 46 (92) |
Rice | 193 (97) | 196 (98) | 168 (84) | 50 (100) | 50 (100) | 46 (92) | 48 (96) |
Arabidopsis | 192 (96) | 192 (96) | 169 (85) | 50 (100) | 49 (98)Â Â | 46 (92) | 49 (98) |