Table 2 Comparison of overall assembly quality before and after the correction of simulated errors using simulated RNA-seq data against the original reference assembly
From: Roast: a tool for reference-free optimization of supertranscriptome assemblies
Organism | Assembly | TransRate score |
|---|---|---|
Human | Reference | 0.80 |
Erroneous | 0.79 | |
Improved | 0.80 | |
Mouse | Reference | 0.98 |
Erroneous | 0.97 | |
Improved | 0.98 | |
Chicken | Reference | 0.83 |
Erroneous | 0.81 | |
Improved | 0.82 | |
Rice | Reference | 0.81 |
Erroneous | 0.79 | |
Improved | 0.81 | |
Arabidopsis | Reference | 0.83 |
Erroneous | 0.81 | |
Improved | 0.83 |