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Fig. 10 | BMC Bioinformatics

Fig. 10

From: TCGAplot: an R package for integrative pan-cancer analysis and visualization of TCGA multi-omics data

Fig. 10

Cancer type specific gene set analysis. a Expression of the gene set "HALLMARK_DNA_REPAIR" in COAD with the function “gs_boxplot("COAD","HALLMARK_DNA_REPAIR")”. b Expression of the gene set "HALLMARK_DNA_REPAIR" in paired COAD samples with the function “gs_paired_boxplot("COAD","HALLMARK_DNA_REPAIR")”. c Expression of the gene set "HALLMARK_DNA_REPAIR" in COAD samples grouped by age with the function “gs_age("COAD","HALLMARK_DNA_REPAIR")”. d Expression of the gene set "HALLMARK_DNA_REPAIR" in COAD samples grouped by three age groups with the function “gs_3age("COAD","HALLMARK_DNA_REPAIR")”. e Expression of the gene set "HALLMARK_DNA_REPAIR" in COAD samples grouped by gender with the function “gs_gender("COAD","HALLMARK_DNA_REPAIR")”. f Expression of the gene set "HALLMARK_DNA_REPAIR" in COAD samples grouped by stage with the function “gs_stage("COAD","HALLMARK_DNA_REPAIR")”

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BMC Bioinformatics

ISSN: 1471-2105

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