Robustness evaluations of pathway activity inference methods on gene expression data

BMC Bioinformatics

Table 2 Number of predicted pathway markers

Pathway activity inference methods	Gene expression dataset
Pathway activity inference methods	Lung GSE10072	Stomach GSE13911	Liver GSE17856	Kidney GSE15641	Thyroid GSE33630	Breast GSE3494
COMBINER	10	12	13	18	14	22
PAC	13	18	32	15	19	22
PLAGE	41	16	20	8	37	8
GSVA	15	15	18	29	12	6
DRW	10	12	12	26	16	17
sDRW	11	8	13	20	10	20
e-DRW	8	13	7	12	9	12

ISSN: 1471-2105