Table 3 Gene expression datasets after pre-processing [46]
From: Robustness evaluations of pathway activity inference methods on gene expression data
Cancer dataset | GEO ID | Platform ID | Number of cancerous sample | Number of normal sample | Number of genes | |
|---|---|---|---|---|---|---|
Raw | Cleaned | |||||
Lung | GSE10072 | GPL96 | 58 | 49 | 22,283 | 12,986 |
Stomach | GSE13911 | GPL570 | 38 | 31 | 54,675 | 12,419 |
Liver | GSE17856 | GPL6480 | 43 | 44 | 25,075 | 13,802 |
Kidney | GSE15641 | GPL96 | 69 | 23 | 22,283 | 11,593 |
Thyroid | GSE33630 | GPL570 | 60 | 45 | 54,675 | 12,986 |
Breast | GSE3494 | GPL96 | 60 | 176 | 22,283 | 12,986 |