Table 4 Pathway data used for each method in benchmark analysis
From: Robustness evaluations of pathway activity inference methods on gene expression data
Method | Number of pathway input | Pathway database | Directed pathway network |
|---|---|---|---|
COMBINER | 624 | MsigDB | – |
PAC | 472 | MsigDB | – |
PLAGE | 400 | MsigDB | – |
GSVA | 3225 | MsigDB | – |
DRW | 300 | KEGG | 6618 nodes and 111,730 edges |
sDRW | 300 | KEGG | 6618 nodes and 111,730 edges |
e-DRW | 536 | 328 KEGG, 208 NCI-PID | KEGG: 6667 nodes and 116,773 edges, PID: 2817 nodes and 39,289 edges |