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Fig. 3 | BMC Bioinformatics

Fig. 3

From: InClust+: the deep generative framework with mask modules for multimodal data integration, imputation, and cross-modal generation

Fig. 3

The results for integration of multiple monomodal (unpaired) data and subsequently gene imputation by inClust+. A The UMAP plot of the scRNA-seq and MERFISH data (the top 50 PCs) colored by the modalities (top) and cell types (bottom). B The UMAP plot of the low dimensional representations with covariate effects for the scRNA-seq and MERFISH data in inClust+ colored by the modalities (top) and cell types (bottom). C The UMAP plot of the low dimensional representations without the covariate effects for the scRNA-seq and MERFISH data in inClust+ colored by the modalities (top) and cell types (bottom). D Comparison of imputation capability of inClust+ and uniPort. Boxplots of aPCC and mPCC (n = 12), and aSCC and mSCC (n = 12) between real and imputed MERFISH genes generated by inClust+ and uniPort were plotted

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BMC Bioinformatics

ISSN: 1471-2105

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