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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Exploring gene-patient association to identify personalized cancer driver genes by linear neighborhood propagation

Fig. 1

Illustration of LPDriver. I Constructing the gene interaction network G1 and G2. II Removing the edges that exist in both G1 and G2. III Removing the edges(interactions) that are not supported by the known gene interaction network. IV Transform Gp(V,E) into bipartite graph and identify driver genes of patient p in bipartite graph. V Identify the potential driver genes of all patients to construct the matrix Mgp. VI Compute the linear neighborhood similarity of genes among patients in Mgp. VII Adopt label propagation method based on matrix S to refine Mgp. VIII Identify highly rank genes as the personalized driver genes from F*

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