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Table 1 Model performance comparison

From: SNVstory: inferring genetic ancestry from genome sequencing data

 

Performance metric

ROC AUC

P–R AUC

F1 score

Continental

   

SNVstory

0.996

0.980

0.918

RFMix

0.997

0.981

0.922

ADMIXTURE

0.946

0.477

0.537

Subcontinental

   

SNVstory

0.986

0.965

0.885

RFMix

0.992

0.771

0.665

ADMIXTURE

0.977

0.937

0.783

  1. A benchmarking analysis was performed using SNVstory and two alternative ancestry inference tools, ADMIXTURE and RFMix
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BMC Bioinformatics

ISSN: 1471-2105

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