Fig. 9
From: Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed)
In lieu of barplots (which are sub-optimal in this case because of the extreme differences in counts between cells), we here present tables that show the number of \(1\,{\text {kb}}\) windows per oHHMed-inferred epigenetic marker state (columns) that fall within specific functionally annotated regions (rows). Panel A shows results for ATAC, panel B those for H3K27ac, and panel C those for H3K27me3; in all panels, the cells in the tables are coloured by darkening shades of purple for increasing counts