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Fig. 1 | BMC Bioinformatics

Fig. 1

From: CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny

Fig. 1

Implementation of CITEViz. A Example of a custom Gate class, which contains a counter, input cell barcodes, output cell barcodes, the feature of the x and y axes, gate coordinates, and more. B Back-end of CITEViz. Gate classes are created immediately by the input of an interactive cell selection plus the trigger of the Gate button. All attributes of the Gate class are intrinsic to a gate, except for the output cells which are passed between gates. Unlike other packages, this process can be repeated to the nth degree in CITEViz. C Screenshot of the gating page in CITEViz with an example PBMC CITE-seq dataset [5]

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BMC Bioinformatics

ISSN: 1471-2105

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