From: Mora: abundance aware metagenomic read re-assignment for disentangling similar strains
Algorithm | Species | Genus | ||||
---|---|---|---|---|---|---|
F1 | Sensitivity | Precision | F1 | Sensitivity | Precision | |
Pufferfish | 46.23 | 32.61 | 79.38 | 55.54 | 39.18 | 95.36 |
Mora + Pufferfish | 47.79 | 33.72 | 82.06 | 56.00 | 39.50 | 96.15 |
AugPatho2 + Pufferfish | 48.40 | 34.14 | 83.11 | 56.11 | 39.58 | 96.34 |
Bowtie2 | 64.08 | 52.36 | 82.58 | 74.96 | 61.24 | 96.59 |
Mora + Bowtie2 | 65.23 | 53.29 | 84.06 | 75.17 | 61.41 | 96.87 |
AugPatho2 + Bowtie2 | 66.10 | 54.01 | 85.18 | 75.27 | 61.24 | 96.99 |
Kraken2 | 70.28 | 66.32 | 74.73 | 88.54 | 83.55 | 94.15 |
Clark* | 13.78 | 7.80 | 59.11 | 20.13 | 11.39 | 86.37 |