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Table 11 Comparison of various evaluation indicators of 12 node ranking methods on the S-PIN, D-PIN, RD-PIN and the CM-PIN on HDIP dataset (top 100/top 600/MCC/FM/ACC/PRAUC)

From: A protein network refinement method based on module discovery and biological information

Methods

S-PIN

CM-PIN(S)

D-PIN

CM-PIN(D)

RD-PIN

CM-PIN(RD)

LAC

46/204/

0.189/0.317

0.785/0.296

59/226/

0.229/0.350

0.795/0.357

44/210/

0.211/0.335

0.791/0.305

51/221/

0.224/0.346

0.794/0.327

43/185/

0.144/0.278

0.773/0.282

50/204/

0.199/0.325

0.788/0.317

DC

32/158/

0.122/0.260

0.767/0.236

48/227/

0.245/0.364

0.800/0.311

33/181/

0.165/0.296

0.779/0.276

48/223/

0.237/0.357

0.798/0.315

37/177/

0.148/0.282

0.774/0.238

44/199/

0.202/0.328

0.789/0.285

DMNC

43/178/

0.153/0.287

0.776/0.281

53/226/

0.229/0.350

0.795/0.353

45/202/

0.204/0.329

0.789/0.298

51/224/

0.247/0.365

0.800/0.326

39/186/

0.148/0.282

0.774/0.282

48/203/

0.201/0.326

0.788/0.316

NC

47/198/

0.175/0.304

0.781/0.291

55/224/

0.229/0.350

0.795/0.352

45/210/

0.207/0.332

0.790/0.301

49/223/

0.233/0.354

0.797/0.322

44/184/

0.140/0.276

0.772/0.275

49/203/

0.201/0.326

0.788/0.310

TP

29/145/

0.101/0.242

0.762/0.224

50/229/

0.248/0.366

0.801/0.309

35/177/

0.176/0.306

0.782/0.280

47/226/

0.250/0.368

0.801/0.317

35/176/

0.152/0.285

0.775/0.240

43/199/

0.204/0.329

0.789/0.284

LID

49/204/

0.188/0.315

0.785/0.300

60/225/

0.229/0.350

0.795/0.360

52/207/

0.207/0.332

0.790/0.309

53/224/

0.242/0.361

0.799/0.329

47/181/

0.134/0.270

0.770/0.285

48/202/

0.201/0.326

0.788/0.317

BC

23/135/

0.086/0.230

0.758/0.205

42/213/

0.206/0.331

0.789/0.292

32/176/

0.152/0.285

0.775/0.250

47/208/

0.224/0.346

0.794/0.297

32/153/

0.109/0.249

0.764/0.222

36/193/

0.201/0.326

0.788/0.272

CC

19/116/

0.049/0.198

0.748/0.185

42/197/

0.188/0.351

0.785/0.273

31/157/

0.126/0.263

0.768/0.259

42/212/

0.211/0.335

0.791/0.305

26/134/

0.099/0.241

0.761/0.219

29/201/

0.204/0.329

0.789/0.263

PR

26/145/

0.093/0.236

0.759/0.205

42/227/

0.233/0.354

0.797/0.298

30/170/

0.127/0.265

0.769/0.246

37/210/

0.229/0.350

0.795/0.304

25/148/

0.072/0.218

0.754/0.217

41/201/

0.201/0.326

0.788/0.278

LR

23/130/

0.062/0.200

0.751/0.192

38/193/

0.186/0.314

0.784/0.277

32/173/

0.148/0.282

0.774/0.241

37/212/

0.214/0.338

0.792/0.301

29/161/

0.148/0.282

0.768/0.223

37/204/

0.197/0.324

0.787/0.279

PeC

50/231/

0.230/0.351

0.783/0.327

56/257/

0.289/0.401

0.811/0.374

50/231/

0.233/0.354

0.797/0.327

54/236/

0.266/0.382

0.805/0.354

45/186/

0.173/0.303

0.781/0.273

57/206/

0.181/0.310

0.783/0.311

WDC

46/231/

0.235/0.355

0.797/0.308

58/245/

0.238/0.358

0.798/0.362

44/230/

0.227/0.349

0.795/0.312

55/233/

0.242/0.361

0.799/0.332

44/190/

0.163/0.295

0.778/0.267

51/180/

0.139/0.274

0.772/0.300