Table 4 Comparison of PRAUC values of 12 node ranking methods on the S-PIN, D-PIN, RD-PIN and their corresponding CM-PIN on YDIP and YBioGRID datasets
From: A protein network refinement method based on module discovery and biological information
Methods | YDIP | YBioGRID | ||||
|---|---|---|---|---|---|---|
S-PIN/CM-PIN(S) | D-PIN/CM-PIN(D) | RD-PIN/CM-PIN(RD) | S-PIN/CM-PIN(S) | D-PIN/CM-PIN(D) | RD-PIN/CM-PIN(RD) | |
LAC | 0.484/0.502 | 0.503/0.537 | 0.517/0.567 | 0.413/0.446 | 0.431/0.469 | 0.448/0.489 |
DC | 0.411/0.459 | 0.435/0.486 | 0.497/0.530 | 0.410/0.444 | 0.426/0.455 | 0.474/0.494 |
DMNC | 0.421/0.454 | 0.451/0.500 | 0.465/0.538 | 0.329/0.413 | 0.376/0.436 | 0.404/0.451 |
NC | 0.478/0.506 | 0.496/0.535 | 0.506/0.565 | 0.424/0.459 | 0.442/0.480 | 0.461/0.499 |
TP | 0.387/0.448 | 0.419/0.478 | 0.497/0.528 | 0.321/0.429 | 0.338/0.430 | 0.463/0.469 |
LID | 0.488/0.504 | 0.513/0.543 | 0.528/0.572 | 0.418/0.448 | 0.435/0.472 | 0.451/0.491 |
BC | 0.350/0.414 | 0.363/0.426 | 0.433/0.480 | 0.364/0.442 | 0.354/0.409 | 0.379/0.399 |
CC | 0.360/0.411 | 0.372/0.428 | 0.456/0.477 | 0.260/0.402 | 0.275/0.381 | 0.398/0.400 |
PR | 0.388/0.443 | 0.400/0.453 | 0.445/0.501 | 0.404/0.452 | 0.408/0.445 | 0.442/0.468 |
LR | 0.362/0.423 | 0.373/0.426 | 0.433/0.483 | 0.312/0.389 | 0.327/0.376 | 0.374/0.401 |
PeC | 0.431/0.480 | 0.435/0.491 | 0.470/0.526 | 0.384/0.429 | 0.406/0.443 | 0.430/0.466 |
WDC | 0.486/0.518 | 0.483/0.526 | 0.516/0.561 | 0.430/0.462 | 0.432/0.466 | 0.465/0.501 |