Skip to main content

Table 2 Combinations of window size and synteny ratio on the AMNOG

From: OrthoRefine: automated enhancement of prior ortholog identification via synteny

Window size

Synteny ratio

4 Escherichia

4 Gammaproteo-bacteria

16 Actino-mycetota

3 Saccharomyces

Average

AMNOG

Average max number orthologous genes (AMNOG)

2

0.5

3.16

2.52

3.2

2.3

2.8

4

0.25

3.15

2.54

3.21

2.33

2.81

4

0.5

3.2

2.57

3.41

2.44

2.91

6

0.2

3.17

2.6

3.41

2.32

2.88

6

0.5

3.19

2.59

3.38

2.55

2.93

8

0.2

3.19

2.57

3.42

2.41

2.9

8

0.3

3.2

2.57

3.44

2.54

2.94

8

0.5

3.24

2.57

3.39

2.59

2.95

10

0.2

3.22

2.58

3.4

2.39

2.9

10

0.3

3.22

2.57

3.45

2.6

2.96

10

0.5

3.23

2.56

3.34

2.67

2.95

30

0.2

3.22

2.6

3.4

2.72

2.99

30

0.3

3.23

2.56

3.31

2.73

2.96

30

0.5

3.17

2.54

3.02

2.68

2.85

40

0.2

3.2

2.59

3.44

2.73

2.99

40

0.3

3.21

2.57

3.29

2.69

2.94

40

0.5

3.18

2.53

2.9

2.7

2.83

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us