OrthoRefine: automated enhancement of prior ortholog identification via synteny

BMC Bioinformatics

Table 3 Names and RefSeq accessions for genomes used in Lim et al. 2022

Genius species	RefSeq accession	Gene locus tag (gene annotation)
Escherichia coli	GCF_000005845.2	b1916 (sdiA)
Salmonella enterica	GCF_000006945.2	STM1950 (sdiA)
Klebsiella pneumoniae	GCF_000445405.1	N559_RS09495 (sdiA)
Pseudomonas aeruginosa	GCF_001181725.1	AFI95_RS32400 (tr, luxR family) AFI95_RS29375 (lasR) AFI95_RS07465 (rhlR) AFI95_RS28195 (qscR)

Gene annotations are in parenthesis: Suppressor of cell division A (sdiA), transcription regulator (tr) which is further noted as part of the luminescence (luxR) family, regulator of elastase lasB (lasR), rhamnolipid regulator (rhlR), and quorum-sensing transcription repressor (qscR)

ISSN: 1471-2105