Volume 13 Supplement 5

Selected articles from the First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011): Bioinformatics


Edited by Ion Mandoiu, Teresa Przytycka, and Sanguthevar Rajasekaran

First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011). Go to conference site.

Orlando, FL, USA

3-5 February 2011

  1. Research

    PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

    A challenging issue in designing computational methods for predicting the gene structure into exons and introns from a cluster of transcript (EST, mRNA) sequences, is guaranteeing accuracy as well as efficienc...

    Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova and Paola Bonizzoni

    BMC Bioinformatics 2012 13(Suppl 5):S2

    Published on: 12 April 2012

  2. Research

    Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power

    Pairwise statistical significance has been recognized to be able to accurately identify related sequences, which is a very important cornerstone procedure in numerous bioinformatics applications. However, it i...

    Yuhong Zhang, Sanchit Misra, Ankit Agrawal, Md Mostofa Ali Patwary, Wei-keng Liao, Zhiguang Qin and Alok Choudhary

    BMC Bioinformatics 2012 13(Suppl 5):S3

    Published on: 12 April 2012

  3. Research

    Parametric modeling of cellular state transitions as measured with flow cytometry

    Gradual or sudden transitions among different states as exhibited by cell populations in a biological sample under particular conditions or stimuli can be detected and profiled by flow cytometric time course d...

    Hsiu J Ho, Tsung I Lin, Hannah H Chang, Steven B Haase, Sui Huang and Saumyadipta Pyne

    BMC Bioinformatics 2012 13(Suppl 5):S5

    Published on: 12 April 2012

  4. Research

    Inferring serum proteolytic activity from LC-MS/MS data

    In this paper we deal with modeling serum proteolysis process from tandem mass spectrometry data. The parameters of peptide degradation process inferred from LC-MS/MS data correspond directly to the activity o...

    Piotr Dittwald, Jerzy Ostrowski, Jakub Karczmarski and Anna Gambin

    BMC Bioinformatics 2012 13(Suppl 5):S7

    Published on: 12 April 2012

  5. Research

    Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

    The computational identification of RNAs in genomic sequences requires the identification of signals of RNA sequences. Shannon base pairing entropy is an indicator for RNA secondary structure fold certainty in...

    Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I Shaw, Ying-Wai Li, Russell L Malmberg and Liming Cai

    BMC Bioinformatics 2012 13(Suppl 5):S1

    Published on: 12 April 2012