Table 2 General approaches for protein interaction extraction
From: Linguistic feature analysis for protein interaction extraction
Method | Information | Algorithm | Data sets |
|---|---|---|---|
[2] | lexical | SVM | AIMed |
[4] | lexical | SVM | AIMed |
| Â | shallow | Â | LLL |
[9] | lexical | Maximum entropy | IEPA |
| Â | shallow | Â | Â |
| Â | deep | Â | Â |
[10] | lexical | SVM | AIMed |
| Â | shallow | Â | Â |
| Â | deep | Â | Â |
[5] | lexical | BayesNet | AIMed |
| Â | deep | NaiveBayes | Â |
| Â | Â | K-nearest neighbour | Â |
| Â | Â | Ensembles | Â |
[3] | lexical | Hand-built rules | HPRD50 |
| Â | shallow | Â | LLL |
| Â | deep | Â | Â |
[15] | shallow | C4.5 | AIMed |
| Â | deep | BayesNet | LLL |
[7] | lexical | SVM | AIMed |
| Â | deep | Â | Â |
[1] | lexical | Sparse RLS | AIMed |
| Â | shallow | Â | BioInfer |
| Â | deep | Â | HPRD50 |
| Â | Â | Â | IEPA |
| Â | Â | Â | LLL |
[6] | lexical | SVM | LLL |
| Â | shallow | Â | Â |
| Â | deep | Â | Â |
[8] | lexical | SVM | AIMed |
| Â | shallow | Â | HPRD50 |
| Â | deep | Â | IEPA |
| Â | Â | Â | LLL |