| w= f= 3 | w= f= 7 | w= f= 11 |
---|
 |
ROC
|
F1
|
ROC
|
F1
|
ROC
|
F1
|
|
0.756
| 0.463 |
0.758*
| 0.469 | 0.748 | 0.452 |
|
0.753
| 0.465 |
0.754
| 0.462 | 0.759 | 0.466 |
|
0.754
| 0.466 |
0.756
| 0.468 | 0.763 | 0.468 |
- The numbers in bold show the best models for a fixed w parameter, as measured by ROC. , and represent the PSI-BLAST profile and YASSPP scoring matrices, respectively. soe, rbf, and lin represent the three different kernels studied using the as the base kernel. * denotes the best classification results in the sub-tables, and ** denotes the best classification results achieved on this dataset. For the best model we report a Q2 accuracy of 83.0% with an se rate of 0.34.