Figure 4

Superpositions of the best predictions for 3vubA on the native structure. The best decoy produced overall was by SAINT for 3vubA, whose native conformation is shown in a). The remaining graphics show the superposition of this native conformation with the best decoy produced by b) SAINT (GDT_TS = 67.57), c) reverse SAINT (GDT_TS =37.62) and d) Rosetta (GDT_TS = 51.24). The SAINT decoy best captures the native loop and sheet conformation; a loop error causes the C-terminal helix to be incorrectly oriented.