Directionality in protein fold prediction

BMC Bioinformatics

Table 6 Clash analysis.

	Code	Forward SAINT mean	Reverse SAINT mean
SAINT better	1mf7A	18.894	1.525
	1oaaA	-2.441	4.579
	2d00A	13.922	-4.265
	1qc7A	-5.440	2.238
Reverse SAINT better	1ji4A	-8.578	-5.016
	1uz3A	-7.861	29.370
	2h0rA	3.683	-6.645
SAINT and Reverse SAINT comparable	1aocA	-1.327	-3.650
	1kf6D	-8.691	-1.861
	2edmA	-6.029	-0.610

Mean difference in clashscores for each protein sequence; the larger the mean difference, the more clashes created by the extrusion. The first four proteins in the table have higher mean GDT_TS scores for SAINT, the next three have higher mean GDT_TS scores for reverse SAINT and the remaining three have comparable mean GDT_TS scores for SAINT and reverse SAINT. There is no evidence that SAINT creates more clashes.

ISSN: 1471-2105