BMC Bioinformatics

Table 3 Confusion matrix of the homeodomain motif specificity group classifier

From: Metamotifs - a generative model for building families of nucleotide position weight matrices

	AbdB	Antp	Bar	Bed	Engrailed	Iroquis	NK-1	NK-2	TGIF-Exd	Class error
AbdB	5	0	0	0	0	0	0	0	0	0.00
Antp	0	15	0	0	2	0	0	0	0	0.12
Bar	0	0	5	0	1	0	0	0	0	0.17
Bcd	0	0	0	4	0	0	0	0	0	0.00
Engrailed	0	1	1	0	23	0	0	0	0	0.08
Iroquis	0	0	0	0	0	3	0	0	0	0.00
NK-1	0	0	0	0	3	0	2	0	0	0.60
NK-2	0	0	0	1	0	0	2	0	0	0.33
Six	0	0	0	1	0	0	2	1	1	0.67
TGIF-Exd	0	0	0	0	0	0	0	1	3	0.25
Totals	5	16	6	5	29	0	4	3

Confusion matrix showing the metamatti predicted classifications of the Noyes et al. (2008) homeodomain motif data. All classes with at least three representative examples were included in the classification (i.e. the two examples of the Ladybird specificity group were removed).

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