Skip to main content

Table 2 Fidelity of FACT depending on the feature set.

From: FACT: Functional annotation transfer between proteins with similar feature architectures

 

Pfam domains

all features

scoring function

# prot (%)

# prot (%)

MLS

891 (9.31)

5,618 (59.70)

MS uni

572 (5.98)

5,592 (58.43)

MS st

594 (6.21)

5,792 (60.52)

FACT

-

7,091 (74.10)

  1. '# prot (%)' denotes the number of top ranked functional equivalents with a unique highest score. Since the FACT scoring considers clan information it was not used for the calculation with only Pfam domains.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us