A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis

Table 1 Summary statistics of the benchmarking results¹

Virus	HIV-1²	HCV
# of test sequences	153,669	66,488
LOOCV error rate
mean	0.0100	0.0063
median	0.0068	0.0034
90% percentile	0.0286	0.0155
99% percentile	0.0395	0.0412
MAP³ (% of sequences higher than the cutoff)
P > = 0.99	97.5	99.6
P > = 0.90	99.1	99.8
P > = 0.50	100.0	100.0
LANL concordance (% of sequences higher than the cutoff)
All	98.9	96.7
O < = 2.0	99.3	96.6

ISSN: 1471-2105