A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis

Table 5 Concordance between LANL and MuLDAS in genotypes for the genome sequences longer than 9,000 bp

Sequence set		HCV	HIV-1
(1) Genome sequences downloaded		1,218	1,131
(2) LANL genotypes known in (1)		1,116	1,086
(3) All confidently genotyped gene segments concordant with LANL genotypes		1,098	938
(4) Some confidently genotyped segments discordant to LANL genotypes		18	148
(5) Accuracy [(3)/(2)]%		98.4	86.3
(6) Recombination pattern 'inferable' from MuLDAS results among (4)		9	103
(7) Including 'partial' successes [(3)+(6)]	cases	1,107	1,041
	%	99.2	95.9

ISSN: 1471-2105