Table 1 Reconstruction results for systems S1, ..., S5.
From: A parameter-adaptive dynamic programming approach for inferring cophylogenies
System | event frequency | best cost vector |
| pco,>/pco,≥ | p qu |
|---|---|---|---|---|---|
S 1 | (6, 5, 2, 1) | (0.166, 0.198, 0.512, 0.987) | 0.008 | 0.00/0.13 | 0.04 |
S 2-ML | (10, 20, 5, 2) | (0.226, 0.114, 0.457, 0.989) | 0.015 | 0.04/0.13 | 0.24 |
S 2-MP | (12, 18, 5, 0) | (0.007, 0.005, 0.018, 0.882) | 0.036 | 0.00/0.00 | 0.78 |
S 3 | (8, 15, 3, 1) | (0.095, 0.053, 0.268, 0.738) | 0.024 | 0.00/0.00 | 0.28 |
S 4 | (9, 11, 3, 1) | (0.077, 0.061, 0.224, 0.667) | 0.011 | 0.01/0.03 | 0.05 |
S 5 | (6, 32, 9, 4) | (0.388, 0.072, 0.252, 0.587) | 0.006 | 0.87/0.98 | 0.00 |
- The event order for the vectors in column 2 (absolute event frequency) and column 3 (best cost vector) is (cospeciation, sorting, duplication, host switch). as in Equation 3. pco,> (respectively pco,≥): probability that a reconstruction based on a randomized instance leads to more (respectively, an equal number or more) cospeciations. pqu: probability that a randomized reconstruction leads to a smaller value of . In all test runs randomization method RND-assoc was used.