Henzler-Wildman K, Kern D: Dynamic personalities of proteins. Nature 2007, 450(7172):964–972. 10.1038/nature06522
Article
CAS
PubMed
Google Scholar
Uzunner U, Shi WB, Liu L, Liu S, Dai SY, Yuan JS: Enzyme structure dynamics of xylanase I from Trichoderma longibrachiatum . BMC Bioinformatics 2010, 11(Suppl 6):S12. 10.1186/1471-2105-11-S6-S12
Article
Google Scholar
Dai SY, Chalmers MJ, Bruning J, Bramlett KS, Osborne HE, Montrose-Rafizadeh C, Barr RJ, Wang Y, Wang MM, Burris TP, et al.: Prediction of the tissue-specificity of selective estrogen receptor modulators by using a single biochemical method. Proc Natl Acad Sci U S A 2008, 105(20):7171–7176. 10.1073/pnas.0710802105
Article
PubMed Central
CAS
PubMed
Google Scholar
Englander SW: Hydrogen exchange and mass spectrometry: A historical perspective. J Am Soc Mass Spectrom 2006.
Google Scholar
Krishna MM, Hoang L, Lin Y, Englander SW: Hydrogen exchange methods to study protein folding. Methods 2004, 34: 51–64. 10.1016/j.ymeth.2004.03.005
Article
CAS
PubMed
Google Scholar
Roder H, Elove GA, Englander SW: Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR. Nature 1988, 335(6192):700–704. 10.1038/335700a0
Article
PubMed Central
CAS
PubMed
Google Scholar
Li J, Lim MS, Li S, Brock M, Pique ME, Woods VL, Craig L: Vibrid cholerae toxin-coregulated pilus structure analyzed by hydrogen/deuterium exchange mass spectrometry. Structure 2008, 16(1):137–148. 10.1016/j.str.2007.10.027
Article
PubMed Central
CAS
PubMed
Google Scholar
Brock M, Fan F, Mei FC, Li S, Gessner C, Woods VL, Cheng X: Conformational analysis of Epac activation using amide hydrogen/deuterium exchange mass spectrometry. J Biol Chem 2007, 282(44):32256–32263. 10.1074/jbc.M706231200
Article
CAS
PubMed
Google Scholar
Lambris JD, Sfyroera G, Schuster M, Chen H, Tzekou A, Papp K, Winters M, Woods VL: Studies on the solvent accessibility of native C3 and its fragments, as analyzed by HDX-MS. Mol Immunol 2007, 44(1–3):202–202. 10.1016/j.molimm.2006.07.130
Article
Google Scholar
Eyles SJ, Kaltashov IA: Methods to study protein dynamics and folding by mass spectrometry. Methods 2004, 34(1):88–99. 10.1016/j.ymeth.2004.03.015
Article
CAS
PubMed
Google Scholar
Begley MJ, Taylor GS, Brock MA, Ghosh P, Woods VL, Dixon JE: Molecular basis for substrate recognition by MTMR2, a myotubularin family phosphoinositide phosphatase. Proc Natl Acad Sci U S A 2006, 103(4):927–932. 10.1073/pnas.0510006103
Article
PubMed Central
CAS
PubMed
Google Scholar
Derunes C, Burgess R, Iraheta E, Kellerer R, Becherer K, Gessner CR, Li S, Hewitt K, Vuori K, Pasquale EB, et al.: Molecular determinants for interaction of SHEP1 with Cas localize to a highly solvent-protected region in the complex. FEBS Lett 2006, 580(1):175–178. 10.1016/j.febslet.2005.11.070
Article
CAS
PubMed
Google Scholar
Black BE, Foltz DR, Chakravarthy S, Luger K, Woods VL, Cleveland DW: Structural determinants for generating centromeric chromatin. Nature 2004, 430(6999):578–582. 10.1038/nature02766
Article
CAS
PubMed
Google Scholar
Powell KD, Fitzgerald MC: High-throughput screening assay for the tunable selection of protein ligands. J Combinat Chem 2004, 6(2):262–269. 10.1021/cc034051e
Article
CAS
Google Scholar
Spraggon G, Pantazatos D, Klock HE, Wilson IA, Woods VL, Lesley SA: On the use of DXMS to produce more crystallizable proteins: Structures of the T-maritima proteins TM0160 and TM1171 (vol 13, pg 3187, 2004). Protein Sci 2005, 14(6):1688–1688.
CAS
Google Scholar
Wong L, Miyashita O, Woods VL, Onuchic JN, Adams JA, Jennings PA: Protein-protein interactions of Csk probed by H-D exchange and computational analysis. Protein Sci 2004, 13: 201–201.
Google Scholar
Chalmers MJ, Busby SA, Pascal BD, He Y, Hendrickson CL, Marshall AG, Griffin PR: Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry. Anal Chem 2006, 78(4):1005–1014. 10.1021/ac051294f
Article
CAS
PubMed
Google Scholar
Tong Y, Wuebbens MM, Rajagopalan KV, Fitzgerald MC: Thermodynamic analysis of subunit interactions in Escherichia coli molybdopterin synthase. Biochemistry 2005, 44(7):2595–2601. 10.1021/bi047762h
Article
CAS
PubMed
Google Scholar
Powell K, Wang M, Silinski P, Ma L, Wales T, Dai S, Warner A, Yang X, Fitzgerald M: The accuracy and precision of a new H/D exchange- and mass spectrometry-based technique for measuring the thermodynamic stability of proteins. Anal Chim Acta 2003, 496(1–2):225–232. 10.1016/S0003-2670(03)01002-X
Article
CAS
Google Scholar
Ma L, Fitzgerald MC: A new H/D exchange- and mass spectrometry-based method for thermodynamic analysis of protein-DNA interactions. Chem Biol 2003, 10(12):1205–1213. 10.1016/j.chembiol.2003.11.017
Article
CAS
PubMed
Google Scholar
Powell KD, Fitzgerald MC: Measurements of protein stability by H/D exchange and matrix-assisted laser desorption/ionization mass spectrometry using picomoles of material. Anal Chem 2001, 73(14):3300–3304. 10.1021/ac0100805
Article
CAS
PubMed
Google Scholar
Chalmers MJ, Busby SA, Pascal BD, Southern MR, Griffin PR: A two-stage differential hydrogen deuterium exchange method for the rapid characterization of protein/ligand interactions. J Biomol Tech 2007, 18(4):194–204.
PubMed Central
PubMed
Google Scholar
Weis DD, Engen JR, Kass IJ: Semi-automated data processing of hydrogen exchange mass spectra using HX-Express. J Am Soc Mass Spectrom 2006, 17(12):1700–1703. 10.1016/j.jasms.2006.07.025
Article
CAS
PubMed
Google Scholar
Pascal BD, Chalmers MJ, Busby SA, Mader CC, Southern MR, Tsinoremas NF, Griffin PR: The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data. BMC Bioinformatics 2007, 8: 156. 10.1186/1471-2105-8-156
Article
PubMed Central
CAS
PubMed
Google Scholar
Pascal BD, Chalmers MJ, Busby SA, Griffin PR: HD desktop: an integrated platform for the analysis and visualization of H/D exchange data. J Am Soc Mass Spectrom 2009, 20(4):601–610. 10.1016/j.jasms.2008.11.019
Article
PubMed Central
CAS
PubMed
Google Scholar
Hotchko M, Anand GS, Komives EA, Ten Eyck LF: Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments. Protein Sci 2006, 15(3):583–601. 10.1110/ps.051774906
Article
PubMed Central
CAS
PubMed
Google Scholar
Slysz GW, Baker CA, Bozsa BM, Dang A, Percy AJ, Bennett M, Schriemer DC: Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses. BMC Bioinformatics 2009, 10: 162. 10.1186/1471-2105-10-162
Article
PubMed Central
PubMed
Google Scholar
Nikamanon P, Pun E, Chou W, Koter MD, Gershon PD: "TOF2H": a precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis. BMC Bioinformatics 2008, 9: 387. 10.1186/1471-2105-9-387
Article
PubMed Central
PubMed
Google Scholar
Chik JK, Vande Graaf JL, Schriemer DC: Quantitating the statistical distribution of deuterium incorporation to extend the utility of H/D exchange MS data. Anal Chem 2006, 78(1):207–214. 10.1021/ac050988l
Article
CAS
PubMed
Google Scholar
Dai SY, Burris TP, Dodge JA, Montrose-Rafizadeh C, Wang Y, Pascal BD, Chalmers MJ, Griffin PR: Unique ligand binding patterns between estrogen receptor alpha and beta revealed by hydrogen-deuterium exchange. Biochemistry 2009, 48(40):9668–9676. 10.1021/bi901149t
Article
PubMed Central
CAS
PubMed
Google Scholar