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Figure 7 | BMC Bioinformatics

Figure 7

From: Revealing the functionality of hypothetical protein KPN00728 from Klebsiella pneumonia e MGH78578: molecular dynamics simulation approaches

Figure 7

(a) Overall backbone RMSD of the complete built model. (b)RMSD of the built model at TM region. The RMSD in the TM region rises from 0 to ~2 Å at the first 0.3 ns of the simulation and remains stable around 2 Å after that. The cytoplasm region, on the other hand, was observed to shift significantly from 0 to ~9 Å during the first 2 ns of the simulation and fluctuates dramatically after 2ns until reach a relative equilibrium after 14 ns.

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BMC Bioinformatics

ISSN: 1471-2105

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