Table 4 de novo assembly results
From: ParticleCall: A particle filter for base calling in next-generation sequencing systems
ParticleCall | ParticleCall | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Coverage | Bustard | Rolexa | naiveBayesCall | BayesCall | via MCEM | via PFEM | ||||||
N50 | Max | N50 | Max | N50 | Max | N50 | Max | N50 | Max | N50 | Max | |
5X | 271 | 607 | 259 | 565 | 278 | 604 | 292 | 629 | 299 | 637 | 289 | 632 |
10X | 1169 | 1750 | 971 | 1557 | 1180 | 1731 | 1269 | 1831 | 1316 | 1900 | 1341 | 1865 |
15X | 3624 | 3823 | 2885 | 3170 | 3726 | 3908 | 3466 | 3741 | 3742 | 3935 | 3697 | 3918 |
20X | 4694 | 4744 | 4529 | 4614 | 4756 | 4816 | 4827 | 4875 | 5102 | 5116 | 4795 | 5039 |