Skip to main content

Temporal and spatial relationship of gene expression in the infarcted rat heart

Background

Gene interaction plays an important role in regulating the molecular and cellular actions in both the physiological and pathological circumstances. Following myocardial infarction (MI), cardiac repair/remodeling represented as cardiac inflammation, angiogenesis, apoptosis, fibrosis occur in the infarcted and noninfarcted myocardium. Local angiotensin system (RAS) is involved in the cardiac repair.

Materials and methods

In the current study, thirty-five genes involved in cardiac repair and RAS were detected by Real Time PCR in both the infarcted and non-infarcted myocardium at different time point post-MI. Pearson correlation analysis showed a number of significant correlations between the expressions of these genes. The different phases of cardiac repair/remodeling and regions of the infarcted heart impacted the correlation directions (positive or reverse), correlation efficient value, and corresponding significant levels. Multiple linear regression models fitting also showed that the different phases of cardiac repair/remodeling and different regions of the infarcted heart determined the dependent factors in the models. The interactions among genes were further explored by Ingenuity Pathway Analysis software. We found that several pathological pathways were involved in cardiac repair and remodeling in the different regions of the infarcted heart at different stages postMI.

Author information

Affiliations

Authors

Corresponding author

Correspondence to Wenyuan Zhao.

Rights and permissions

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Reprints and Permissions

About this article

Cite this article

Zhao, W., Zhao, T., Chen, Y. et al. Temporal and spatial relationship of gene expression in the infarcted rat heart. BMC Bioinformatics 13, A16 (2012). https://doi.org/10.1186/1471-2105-13-S12-A16

Download citation

Keywords

  • Angiotensin
  • Multiple Linear Regression Model
  • Ingenuity Pathway Analysis
  • Angiotensin System
  • Pearson Correlation Analysis