Overview of the genes differentially expressed when comparing roots mock inoculated with those inoculated with Bradyrhizobium japonicum. (a) Differentially expressed genes on the MA-plot. (b) Histogram of the number of reads for inoculated genes after 12 hours. (c) Boxplot of read counts for each group. (d) Scatterplot comparing the number of reads for each gene for inoculated and un-inoculated after 12 hours. (e) Histogram of the number of reads for un-inoculated genes after 12 hours. (f) Differentially expressed genes separately chosen by DEGseq and EdgeR.