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Table 4 List of breast cancer associated SNPs reported by recent genome wide association studies

From: Breast cancer prediction using genome wide single nucleotide polymorphism data

dbSNP ID Gene Reference
rs2981579 FGFR2 Hunter et al., 2007 [30]
rs2420946 FGFR2 Hunter et al., 2007 [30]
rs11200014 FGFR2 Hunter et al., 2007 [30]
rs7696175 TLR1/TLR6 Hunter et al., 2007 [30]
rs17157903 RELN Hunter et al., 2007 [30]
rs1219648 FGFR2 Hunter et al., 2007 [30]
rs3803662 TNRC9/LOC643714 Easton et al., 2007 [37]
rs889312 MAP3K1 Easton et al., 2007 [37]
rs13281615 8q Easton et al., 2007 [37]
rs3817198 LSP1 Easton et al., 2007 [37]
rs2981582 FGFR2 Easton et al., 2007 [37]
rs2075555 COL1A1 Murabito et al., 2007 [38]
rs1978503 FLJ45743 Murabito et al., 2007 [38]
rs1926657 ABCC4 Murabito et al., 2007 [38]
rs13387042 2q35 Stacey et al., 2007 [39]
rs3012642 PHKA/HDAC8 Gold et al., 2008 [40]
rs7203563 A2BP1 Gold et al., 2008 [40]
rs6569479 ECHDC1/RNF146 Gold et al., 2008 [40]
rs2180341 ECHDC1/RNF146 Gold et al., 2008 [40]
rs6569480 ECHDC1/RNF146 Gold et al., 2008 [40]
rs4415084 5p12 Stacey et al., 2008 [41]
rs10941679 5p12 Stacey et al., 2008 [41]
rs2067980 MRPS30 Thomas et al., 2008 [42]
rs7716600 MRPS30 Thomas et al., 2008 [42]
rs11249433 1p11.2 Thomas et al., 2008 [42]
rs999737 RAD51L1 Thomas et al., 2008 [42]
rs4973768 SLC4A7 Ahmed et al., 2009 [43]
rs6504950 STXBP4 Ahmed et al., 2009 [43]
  1. 28 SNPs identified by the 8 recent genome wide association studies on breast cancer. The accuracy of the classifier learned over these 28 genotyped SNPs was not better than the baseline of 51.52%.