BMC Bioinformatics

Table 4 List of breast cancer associated SNPs reported by recent genome wide association studies

From: Breast cancer prediction using genome wide single nucleotide polymorphism data

dbSNP ID	Gene	Reference
rs2981579	FGFR2	Hunter et al., 2007 [30]
rs2420946	FGFR2	Hunter et al., 2007 [30]
rs11200014	FGFR2	Hunter et al., 2007 [30]
rs7696175	TLR1/TLR6	Hunter et al., 2007 [30]
rs17157903	RELN	Hunter et al., 2007 [30]
rs1219648	FGFR2	Hunter et al., 2007 [30]
rs3803662	TNRC9/LOC643714	Easton et al., 2007 [37]
rs889312	MAP3K1	Easton et al., 2007 [37]
rs13281615	8q	Easton et al., 2007 [37]
rs3817198	LSP1	Easton et al., 2007 [37]
rs2981582	FGFR2	Easton et al., 2007 [37]
rs2075555	COL1A1	Murabito et al., 2007 [38]
rs1978503	FLJ45743	Murabito et al., 2007 [38]
rs1926657	ABCC4	Murabito et al., 2007 [38]
rs13387042	2q35	Stacey et al., 2007 [39]
rs3012642	PHKA/HDAC8	Gold et al., 2008 [40]
rs7203563	A2BP1	Gold et al., 2008 [40]
rs6569479	ECHDC1/RNF146	Gold et al., 2008 [40]
rs2180341	ECHDC1/RNF146	Gold et al., 2008 [40]
rs6569480	ECHDC1/RNF146	Gold et al., 2008 [40]
rs4415084	5p12	Stacey et al., 2008 [41]
rs10941679	5p12	Stacey et al., 2008 [41]
rs2067980	MRPS30	Thomas et al., 2008 [42]
rs7716600	MRPS30	Thomas et al., 2008 [42]
rs11249433	1p11.2	Thomas et al., 2008 [42]
rs999737	RAD51L1	Thomas et al., 2008 [42]
rs4973768	SLC4A7	Ahmed et al., 2009 [43]
rs6504950	STXBP4	Ahmed et al., 2009 [43]

28 SNPs identified by the 8 recent genome wide association studies on breast cancer. The accuracy of the classifier learned over these 28 genotyped SNPs was not better than the baseline of 51.52%.

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