Table 1 Overview of the databases used in ModiDB 1.2.1. The databases used and relevant references are listed with the description of extracted information and the version or download date included in MobiDB.
Database | Reference | Information extracted | Version/Date |
|---|---|---|---|
UniProt | [30] | Reference sequences | 2012-07 |
DisProt | [15] | Disorder and structure | 6.00 |
IDEAL | [16] | Disorder and structure | 2012-05-09 |
PDB | [17] | Disorder and structure | 2012-08-15 |
SIFTS | [29] | UniProt-PDB links | 2012-08-15 |
Pfam | [34] | Functional domain annotations | Web service |
OMA Browser | [31] | Protein orthologs | 2012-03 |
CATH | [35] | Structural classification | 3.4 |
DSSP | [36] | Secondary structure | 2012-08-15 |