iMetAMOS workflow and incorporated tools. iMetAMOS currently incorporates 13 assemblers [21, 33–38, 40–45] and 7 validation tools [10–15, 47]. Prokka  is used to predict genes and annotate all assembiles. Users can control the suite of assemblers and validation tools to be executed, as well as the scoring formula used to choose the best assembly. This assembly is evaluated for the presence of contamination.