Figure 1
From: BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies
Program architecture and GUI. (A) Schematic representation of BactImAS modular architecture. The gray box represents the main, Java-based part of BactImAS. The database (SQLite) is a separate part of the platform. All communication between different modules, indicated with arrows, is done through the BactImAS core. (B) BactImAS GUI: Panel on the right displays a frame →bacteria→ROI hierarchy of the current movie and is synchronized with three horizontal scroll panes on the left, showing recorded images from each channel. Selected frame with annotated segmented cells is shown using an ImageJ stack dialog (containing all image channel combinations). The user can manipulate selections using the incorporated ImageJ application. Status pane on the bottom displays various messages from the program e.g. progress updates, measurements, etc.