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Table 1 The 32 modules and nearby genes which are known to be patterned in the early blastoderm (upper block) and 11 additional modules (lower block) for which a pair is linked to the same gene.

From: Computational detection of genomic cis- regulatory modules applied to body patterning in the early Drosophila embryo

Rank Score Gene Location
1 * 37.82 hairy (stripe 6) up/9.2 kb
2 * 28.29 knirps up/1.6 kb
3 * 27.24 tailless up/2.6 kb
5 * 25.32 knirps up/1.1 kb
8 20.80 runt (stripe 7) up/3.2 kb
9 19.89 optix = six3 down/11 kb
10 19.75 Dichaete down/2.3 kb
17 18.88 Tenascin-m up/110 kb
18 18. 87 giant down/14.5 kb
20 * 18.76 Kruppel up/4.1 kb
23 18.30 ken intra
24 18.29 giant (posterior) up/2.1 kb
25 18.29 hairy (stripe 1) up/4.7 kb
27 18.06 hairy (stripe 1 or 5) up/5.4 kb
34 17.36 hairy (stripe 7) up/10.4 kb
36 * 17.25 even skipped (stripe 3+7) up/3.5 kb
37 17.15 knirps-like intra
41 * 17.02 hairy (stripe 5) up/6.2 kb
43 16.94 brinker up/10.9 kb
45 16.83 pipsqueak intra
46 16.82 teashirt intra
48 * 16.80 short gastrulation intra
51 16.76 abd-A up/17 kb
54 16.65 abd-B up/15.3 kb
61 16.20 vnd intra
75 15.90 cap n' collar up/4.3 kb
76 * 15.89 even skipped (stripe 2) up/1.7 kb
91 15.69 runt (stripe 3) up/9.67
120 * 15.34 tailless (proximal torso) up/0.64 kb
124 15.32 proboscopedia intra
126 15.29 runt up/17.2 kb
129 * 15.24 hunchback (central stripe) up/3.34 kb
6 23.97 Cyp6V1 down/1.6 kb
11 19.66 CG13595? down/4.5 kb
14 19.32 Cyp6V1 up/6 kb
55 16.62 echinoid up/58 kb
58 16.34 CG2118/Acf1/faf intra
69 16.01 faf/Acf1/CG2118 intra
93 15.65 echinoid intra
105 15.51 bruno 3 up/95 kb
117 15.37 CG5060 up/31.1 kb
130 15.22 bruno 3 up/25.1 kb
132 15.18 CG5060 up/30.1 kb
  1. Modules which were used to construct weight matrices are marked with stars. The columns give the rank of each module, the score, the gene, information about the location of the module in respect to the gene (up/downstream or intragenic). For References and additional material see additional File 3.