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Table 4 Modules predicted by Ahab from the hairy derived Gibbs motifs that are patterned in the early blastoderm.

From: Computational detection of genomic cis- regulatory modules applied to body patterning in the early Drosophila embryo

Rank Score Gene Location
1 * 42.16 hairy (stripe 7 element) up/10.9 kb
2 * 36.43 hairy (stripe 6 element) up/9.2 kb
3 * 31.43 hairy (stripe 5 element) up/6.2 kb
4 * 25.08 hairy (stripe 7 element) up/10.4 kb
5 22.58 hunchback (hb central stripe) up/3.3 kb
7 21.91 abd-A (in iab-7 region) up/83.2 kb
8 20.02 homothorax intra
9 19.41 bxd (in bxd reg region) up/18.8 kb
10 18.55 frizzled 2 up/37.9 kb
16 17.76 hairy (not in known modules) up/18.9 kb
17 17.73 abd-A up/0.2 kb
21 17.43 abd-A up/35.8 kb
24 16.69 fd64A up/1.4 kb
25 16.55 nubbin up/2.6 kb
31 16.10 extra macrochaetae down/2.2 kb
37 15.90 knirps intra
46 15.90 Btk29A intra
11 18.55 CG6559 up/30 kb
39 15.72 CG6559 up/45 kb
  1. The last two modules are distinguished by proximity to a common gene. Modules which were used to construct weight matrices are marked with stars. The format follows Table 1. For references and additional material see additional File 5.