Table 1 Pfam families with no corresponding SCOP domain families. The annotations for Pfam families were retrieved from the Pfam database.
From: Comparative mapping of sequence-based and structure-based protein domains
Pfam family | Type | Annotation |
|---|---|---|
Cytochrom_B559a | Family | The lumenal portion of cytochrome b559 alpha chain. |
MHC_I_C | Family | The C-terminal region of the MHC class I antigen. |
STN | Family | Found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent recep- tor proteins, which are involved in TonB-dependent active up- take of selective substrates. |
Phe_tRNA- synt_N | Domain | Aminoacyl tRNA synthetase class II, N-terminal domain. |
RNA_pol_Rpb1_R | Repeat | The repetitive C-terminal domain (CTD) of Rpb1 (RNA poly-merase Pol II). |
Prion_octapep | Repeat | Found at the amino terminus of prion proteins and shown to bind to copper. |