Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, Qureshi-Emili A, Li Y, Godwin B, Conover D, Kalbfleisch T, Vijayadamodar G, Yang M, Johnston M, Fields S, Rothberg JM: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000, 403(6770):623–627. 10.1038/35001009
Article
CAS
PubMed
Google Scholar
Ito T, Tashiro K, Muta S, Ozawa R, Chiba T, Nishizawa M, Yamamoto K, Kuhara S, Sakaki Y: Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci USA 2000, 97(3):1143–1147. 10.1073/pnas.97.3.1143
Article
PubMed Central
CAS
PubMed
Google Scholar
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001, 98(8):4569–4574. 10.1073/pnas.061034498
Article
PubMed Central
CAS
PubMed
Google Scholar
Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H: Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 2006, 16(5):686–691. 10.1101/gr.4527806
Article
PubMed Central
CAS
PubMed
Google Scholar
Boucher C, Genin S, Arlat M: Concepts actuels sur la pathogénie chez les bactéries phytopathogènes. C R Acad Sci III 2001, 324(10):915–922.
Article
CAS
PubMed
Google Scholar
Flor HH: Current status of the gene-for-gene concept. Annu Rev Phytopathol 1971, 9: 275–296. 10.1146/annurev.py.09.090171.001423
Article
Google Scholar
Rossier O, Van den Ackerveken G, Bonas U: HrpB2 and HrpF from Xanthomonas are type III-secreted proteins and essential for pathogenicity and recognition by the host plant. Mol Microbiol 2000, 38(4):828–838. 10.1046/j.1365-2958.2000.02173.x
Article
CAS
PubMed
Google Scholar
Alegria MC, Docena C, Khater L, Ramos CH, da Silva AC, Farah CS: New protein-protein interactions identified for the regulatory and structural components and substrates of the type III Secretion system of the phytopathogen Xanthomonas axonopodis Pathovar citri. J Bacteriol 2004, 186(18):6186–6197. 10.1128/JB.186.18.6186-6197.2004
Article
PubMed Central
CAS
PubMed
Google Scholar
Alegria MC, Souza DP, Andrade MO, Docena C, Khater L, Ramos CH, da Silva AC, Farah CS: Identification of new protein-protein interactions involving the products of the chromosome- and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri. J Bacteriol 2005, 187(7):2315–2325. 10.1128/JB.187.7.2315-2325.2005
Article
PubMed Central
CAS
PubMed
Google Scholar
Büttner D, Lorenz C, Weber E, Bonas U: Targeting of two effector protein classes to the type III secretion system by a HpaC- and HpaB-dependent protein complex from Xanthomonas campestris pv. vesicatoria. Mol Microbiol 2006, 59(2):513–527. 10.1111/j.1365-2958.2005.04924.x
Article
PubMed
Google Scholar
Gurlebeck D, Szurek B, Bonas U: Dimerization of the bacterial effector protein AvrBs3 in the plant cell cytoplasm prior to nuclear import. Plant J 2005, 42(2):175–187. 10.1111/j.1365-313X.2005.02370.x
Article
PubMed
Google Scholar
Ezuka A, Kaku H: A historical review of bacterial blight of rice. Bull Natl Inst Agrobiol Resour (Japan) 2000, 15: 53–54.
Google Scholar
Lee BM, Park YJ, Park DS, Kang HW, Kim JG, Song ES, Park IC, Yoon UH, Hahn JH, Koo BS, Lee GB, Kim H, Park HS, Yoon KO, Kim JH, Jung CH, Koh NH, Seo JS, Go SJ: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331 the bacterial blight pathogen of rice. Nucleic Acids Res 2005, 33(2):577–586. 10.1093/nar/gki206
Article
PubMed Central
CAS
PubMed
Google Scholar
Jang M, Park BC, Lee DH, Bae K-H, Cho S, Park HS, Lee BR, Park SG: Interaction proteome analysis of Xanthomonas Hrp proteins. J Microbiol Biotechnol 2007, 17: 359–363.
CAS
PubMed
Google Scholar
Lee BM, Park YJ, Kim JG, Kang HW: Genomic study of Xanthomonas oryzae pv. oryzae KACC10331. Proceedings of the International Workshop Xanthomonas genome research: 27–28 October 2005; Bielefeld Germany
Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P: A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 1995, 270(5243):1804–1806. 10.1126/science.270.5243.1804
Article
CAS
PubMed
Google Scholar
Hubbard TJ, Murzin AG, Brenner SE, Chothia C: SCOP: a structural classification of proteins database. Nucleic acids research 1997, 25(1):236–239. 10.1093/nar/25.1.236
Article
PubMed Central
CAS
PubMed
Google Scholar
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic acids research 1997, 25(17):3389–3402. 10.1093/nar/25.17.3389
Article
PubMed Central
CAS
PubMed
Google Scholar
Park D, Lee S, Bolser D, Schroeder M, Lappe M, Oh D, Bhak J: Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinformatics (Oxford, England) 2005, 21(15):3234–3240. 10.1093/bioinformatics/bti512
Article
CAS
Google Scholar
Park J, Lappe M, Teichmann SA: Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Journal of molecular biology 2001, 307(3):929–938. 10.1006/jmbi.2001.4526
Article
CAS
PubMed
Google Scholar
Gong S, Yoon G, Jang I, Bolser D, Dafas P, Schroeder M, Choi H, Cho Y, Han K, Lee S, Choi H, Lappe M, Holm L, Kim S, Oh D, Bhak J: PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinformatics (Oxford, England) 2005, 21(10):2541–2543. 10.1093/bioinformatics/bti366
Article
CAS
Google Scholar
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D: DIP: the database of interacting proteins. Nucleic acids research 2000, 28(1):289–291. 10.1093/nar/28.1.289
Article
PubMed Central
CAS
PubMed
Google Scholar
Bader GD, Hogue CW: BIND – a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics (Oxford, England) 2000, 16(5):465–477. 10.1093/bioinformatics/16.5.465
Article
CAS
Google Scholar
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R: IntAct: an open source molecular interaction database. Nucleic acids research 2004, (32 Database):D452–455. 10.1093/nar/gkh052
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G: MINT: a Molecular INTeraction database. FEBS letters 2002, 513(1):135–140. 10.1016/S0014-5793(01)03293-8
Article
CAS
PubMed
Google Scholar
Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A: Human protein reference database as a discovery resource for proteomics. Nucleic acids research 2004, (32 Database):D497–501. 10.1093/nar/gkh070
Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M: BioGRID: a general repository for interaction datasets. Nucleic acids research 2006, (34 Database):D535–539. 10.1093/nar/gkj109
Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic acids research 1998, 26(1):320–322. 10.1093/nar/26.1.320
Article
PubMed Central
CAS
PubMed
Google Scholar
Finn RD, Marshall M, Bateman A: iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics (Oxford, England) 2005, 21(3):410–412. 10.1093/bioinformatics/bti011
Article
CAS
Google Scholar
Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R: The Gene Ontology Annotation (GOA) Database : sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Research 2004, (32 Database):D262-D266. 10.1093/nar/gkh021