Table 3 Comparison of baseline arrays results using R/Bioconductor and dChip implementation

33304_at

interferon stimulated gene 20 kDa

203.01

284.72

284.20

823_at

chemokine (C-X3-C motif) ligand 1

4.93

66.60

47.16

200606_at

desmoplakin (DPI, DPII)

12.38

97.36

97.68

202269_x_at

guanylate binding protein 1

250.15

192.46

220.40

202270_at

guanylate binding protein 1

220.16

131.76

152.16

202687_s_at

tumor necrosis factor member 10

75.06

104.00

188.82

202688_at

tumor necrosis factor member 10

464.46

316.93

334.35

202748_at

guanylate binding protein 2, interferon-inducible

409.70

305.82

247.40

202869_at

2',5'-oligoadenylate synthetase 1

5.81

75.13

209.99

203148_s_at

tripartite motif-containing 14

38.57

96.29

203.86

203153_at

interferon-induced protein

7.75

58.02

84.72

203236_s_at

lectin, galactoside-binding, soluble, 9

146.27

176.17

277.38

203595_s_at

retinoic acid- and interferon-inducible protein

50.34

169.34

296.66

204070_at

retinoic acid receptor responder 3

16.93

90.63

95.42

204439_at

chromosome 1 open reading frame 29

5.06

39.15

50.84

204533_at

chemokine (C-X-C motif) ligand 10

4.16

76.22

97.55

204769_s_at

transporter 2, ATP-binding cassette

50.42

180.53

241.98

204972_at

2'-5'-oligoadenylate synthetase 2

4.97

56.39

61.14

204994_at

myxovirus (influenza virus) resistance 2

3.85

74.62

63.91

205660_at

2'-5'-oligoadenylate synthetase-like

3.64

101.76

113.84

206271_at

toll-like receptor 3

5.82

46.99

92.93

206503_x_at

promyelocytic leukemia

114.42

292.54

288.58

206553_at

2'-5'-oligoadenylate synthetase 2

19.89

90.71

55.00

207375_s_at

interleukin 15 receptor, alpha

17.48

219.39

230.35

207928_s_at

glycine receptor, alpha 3

8.48

14.27

1.15

208012_x_at

SP110 nuclear body protein

122.80

250.06

291.32

208392_x_at

SP110 nuclear body protein

8.20

94.29

155.09

208436_s_at

interferon regulatory factor 7

45.15

138.04

259.61

209546_s_at

apolipoprotein L, 1

69.01

158.61

493.11

209969_s_at

signal transducer and activator of transcription 1

142.29

210.42

241.42

210029_at

indoleamine-pyrrole 2,3 dioxygenase

5.07

105.59

99.88

210163_at

chemokine (C-X-C motif) ligand 11

7.94

22.10

27.88

210797_s_at

2'-5'-oligoadenylate synthetase-like

6.44

80.66

83.82

210846_x_at

tripartite motif-containing 14

9.07

34.13

38.65

211013_x_at

promyelocytic leukemia

161.42

279.82

292.75

211122_s_at

chemokine (C-X-C motif) ligand 11

7.12

23.88

40.68

213261_at

KIAA0342 gene product

10.03

120.40

135.93

213716_s_at

secreted and transmembrane 1

8.37

220.23

120.94

213797_at

vipirin

4.70

33.70

74.26

214038_at

chemokine (C-C motif) ligand 8

8.16

39.84

47.63

214059_at

interferon-induced protein 44

7.65

46.42

68.26

214329_x_at

ESTs

104.51

62.56

338.08

218400_at

2'-5'-oligoadenylate synthetase 3

25.02

128.86

242.05

219011_at

pleckstrin homology domain

5.92

81.93

139.71

219364_at

likely ortholog of mouse D11lgp2

4.44

81.92

92.46

219593_at

peptide transporter 3

3.52

129.28

105.99

219684_at

28 kD interferon responsive protein

3.66

55.44

71.72

219691_at

hypothetical protein FLJ20073

48.86

66.73

85.39

219863_at

cyclin-E binding protein 1

8.03

64.18

212.87

220104_at

likely ortholog of rat zinc-finger antiviral protein

18.28

70.07

86.64

221087_s_at

apolipoprotein L, 3

204.63

272.26

211.18

221371_at

tumor necrosis factor member 18

98.32

354.34

258.60

221653_x_at

apolipoprotein L, 2

60.81

153.69

286.52