Table 4 Comparison of experiment arrays results using R/Bioconductor and dChip implementation

33304_at

interferon stimulated gene 20 kDa

3196.51

2268.74

2244.54

823_at

chemokine (C-X3-C motif) ligand 1

94.32

199.31

303.39

200606_at

desmoplakin (DPI, DPII)

346.10

472.57

459.07

202269_x_at

guanylate binding protein 1

9812.82

4339.89

3651.44

202270_at

guanylate binding protein 1

6437.35

2278.30

2282.05

202687_s_at

tumor necrosis factor member 10

2156.88

1550.21

2133.03

202688_at

tumor necrosis factor member 10

7854.88

3398.70

3309.36

202748_at

guanylate binding protein 2, interferon-inducible

2345.96

1250.53

1007.71

202869_at

2',5'-oligoadenylate synthetase 1

3531.07

2325.40

3112.07

203148_s_at

tripartite motif-containing 14

2521.04

1435.02

1774.94

203153_at

interferon-induced protein

15412.19

8556.41

6863.81

203236_s_at

lectin, galactoside-binding, soluble, 9

1711.84

847.55

1540.56

203595_s_at

retinoic acid- and interferon-inducible protein

2012.55

2181.61

2144.76

204070_at

retinoic acid receptor responder 3

211.37

292.39

314.03

204439_at

chromosome 1 open reading frame 29

3293.52

2515.21

1982.76

204533_at

chemokine (C-X-C motif) ligand 10

3827.84

3009.14

3018.77

204769_s_at

transporter 2, ATP-binding cassette

351.22

608.05

971.37

204972_at

2'-5'-oligoadenylate synthetase 2

2566.06

1918.87

2173.07

204994_at

myxovirus (influenza virus) resistance 2

1879.30

1864.21

2312.15

205660_at

2'-5'-oligoadenylate synthetase-like

2757.19

3007.87

2793.93

206271_at

toll-like receptor 3

572.08

560.92

905.37

206503_x_at

promyelocytic leukemia

737.59

913.65

910.07

206553_at

2'-5'-oligoadenylate synthetase 2

315.50

323.83

873.65

207375_s_at

interleukin 15 receptor, alpha

438.00

1020.22

1114.76

207928_s_at

glycine receptor, alpha 3

8.43

14.61

2.37

208012_x_at

SP110 nuclear body protein

4220.13

2720.23

2436.07

208392_x_at

SP110 nuclear body protein

347.25

510.43

842.89

208436_s_at

interferon regulatory factor 7

2270.19

2097.07

3397.64

209546_s_at

apolipoprotein L, 1

1379.27

915.53

2170.99

209969_s_at

signal transducer and activator of transcription 1

3157.23

2027.40

1642.44

210029_at

indoleamine-pyrrole 2,3 dioxygenase

833.17

1133.97

814.88

210163_at

chemokine (C-X-C motif) ligand 11

4702.03

2094.38

2400.30

210797_s_at

2'-5'-oligoadenylate synthetase-like

3022.68

2622.26

2210.17

210846_x_at

tripartite motif-containing 14

20.39

70.48

139.55

211013_x_at

promyelocytic leukemia

952.73

861.97

891.32

211122_s_at

chemokine (C-X-C motif) ligand 11

6782.66

2521.40

2835.46

213261_at

KIAA0342 gene product

184.92

481.56

598.16

213716_s_at

secreted and transmembrane 1

924.99

1132.93

1844.02

213797_at

vipirin

9384.39

4037.25

4883.14

214038_at

chemokine (C-C motif) ligand 8

131.65

153.26

209.79

214059_at

interferon-induced protein 44

460.99

417.83

417.94

214329_x_at

ESTs

1651.68

566.67

2344.63

218400_at

2'-5'-oligoadenylate synthetase 3

1914.27

2042.07

1695.06

219011_at

pleckstrin homology domain

33.03

216.27

462.15

219364_at

likely ortholog of mouse D11lgp2

23.39

211.10

828.68

219593_at

peptide transporter 3

678.07

754.28

1005.54

219684_at

28 kD interferon responsive protein

678.29

651.96

792.34

219691_at

hypothetical protein FLJ20073

1761.43

914.96

1068.37

219863_at

cyclin-E binding protein 1

2191.56

1844.42

2329.30

220104_at

likely ortholog of rat zinc-finger antiviral protein

500.61

427.62

547.91

221087_s_at

apolipoprotein L, 3

1873.08

1325.73

1547.18

221371_at

tumor necrosis factor member 18

787.94

1269.50

821.30

221653_x_at

apolipoprotein L, 2

520.21

609.52

1495.00