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Table 1 Datasets

From: Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework

Dataset Disease Samples Samples per phenotype Source
Swindell [65] Psoriasis 180 Healthy control: 64; GSE13355
Psoriatic non-lesional skin: 58;
Psoriatic lesional skin: 58
Yao [66] Psoriasis 82 Healthy control: 21; GSE14905
Psoriatic non-lesional skin: 28;
Psoriatic lesional skin: 33
Farmer [67] Breast cancer 49 Apocrine tumour: 6; GSE1561
Basal tumour: 16;
Luminal tumour: 27
Pawitan [68] Breast cancer 139 Normal: 37; GSE1456
Luminal tumour: 62;
ERBB2: 15;
Basal: 25
Singh [3] Prostate cancer 102 Normal: 50; www.broadinstitute.org
Tumour: 52
Shipp [63] DLBCL 77 DLBCL: 58; www.broadinstitute.org
Follicular lymphoma: 19
Popovici [8] Breast cancer 230 Residual invasive cancer: 182; GSE24061
No residual invasive cancer: 48
Desmedt [4] Breast cancer 198 Metastatic: 51; GSE7390
Non-metastatic: 147
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