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Table 2 Comparison of RNA alignment methods

From: ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs

  LocARNA ExpLoc-P ExpLoc-P ExpLoc RAF
   (variant 1) (variant 2) γ =10  
Speedup 1 3.9 4.6 5.0 14.4
Runtime 13.8 h 3.5 h 3.0 h 2.8 h 1.0 h
SPS 0.87 0.86 0.84 0.81 0.86