Table 2 Comparison of RNA alignment methods
From: ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs
LocARNA | ExpLoc-P | ExpLoc-P | ExpLoc | RAF | |
|---|---|---|---|---|---|
(variant 1) | (variant 2) | γ =10 | |||
Speedup | 1 | 3.9 | 4.6 | 5.0 | 14.4 |
Runtime | 13.8 h | 3.5 h | 3.0 h | 2.8 h | 1.0 h |
SPS | 0.87 | 0.86 | 0.84 | 0.81 | 0.86 |