Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction

Table 2 Organism-specific and general metabolic reference databases available for the Metabolome Searcher

Organism	ProCyc database	Metabolic reference database
Escherichia coli K12	EcoCyc	E. coli K12
Escherichia coli O157:H7	Ecoo157Cyc	E. coli O157:H7
Homosapiens	HumanCyc	Homo sapiens
KEGG Compounds		KEGG Compounds
Lactococcus lactis ssp. lactis IL1403	LlactisCyc¹	L. lactis ssp. lactis IL1403
Lactococcus lactis ssp. cremoris SK11	LaccremoCyc¹	L. lactis ssp. cremoris SK11
Lactobacillus acidophilus NCFM	LbacidCyc¹	Lb. acidophilus NCFM
Lactobacillus johnsonii NCC 533	LbjohnCyc¹	Lb. johnsonii NCC 533
Lactobacillus plantarum WCFS1	LbplanCyc¹	Lb. plantarum WCFS1
Listeria monocytogenes EGDe	LmonoCyc¹	Listeria monocytogenesEGDe
Mycobacterium bovis AF2122/97	MbovisCyc¹	M. bovis AF2122/97
MetaCyc	MetaCyc	MetaCyc
Staphylococcus aureus Mu50	SaureusCyc¹	S. aureus ssp. aureus Mu50
Saccharomyces cerevisiae S288C	YeastCyc²	S. cerevisiae S288C
Salmonella enterica ssp. enterica serovar Typhimurium LT2	Styp99287Cyc³	Salmonella typhimurium LT2

ISSN: 1471-2105