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Table 2 Organism-specific and general metabolic reference databases available for the Metabolome Searcher

From: Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction

Organism ProCyc database Metabolic reference database
Escherichia coli K12 EcoCyc E. coli K12
Escherichia coli O157:H7 Ecoo157Cyc E. coli O157:H7
Homosapiens HumanCyc Homo sapiens
KEGG Compounds   KEGG Compounds
Lactococcus lactis ssp. lactis IL1403 LlactisCyc1 L. lactis ssp. lactis IL1403
Lactococcus lactis ssp. cremoris SK11 LaccremoCyc1 L. lactis ssp. cremoris SK11
Lactobacillus acidophilus NCFM LbacidCyc1 Lb. acidophilus NCFM
Lactobacillus johnsonii NCC 533 LbjohnCyc1 Lb. johnsonii NCC 533
Lactobacillus plantarum WCFS1 LbplanCyc1 Lb. plantarum WCFS1
Listeria monocytogenes EGDe LmonoCyc1 Listeria monocytogenesEGDe
Mycobacterium bovis AF2122/97 MbovisCyc1 M. bovis AF2122/97
MetaCyc MetaCyc MetaCyc
Staphylococcus aureus Mu50 SaureusCyc1 S. aureus ssp. aureus Mu50
Saccharomyces cerevisiae S288C YeastCyc2 S. cerevisiae S288C
Salmonella enterica ssp. enterica serovar Typhimurium LT2 Styp99287Cyc3 Salmonella typhimurium LT2
  1. 1PGDBs reconstructed, curated and hosted in ProCyc.
  2. 2Obtained from the Yeast genome database.
  3. 3Downloaded from the Pathway Tools registry of PGDBs.