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Table 5 Allocation of BLASTX hits between bona fide and orphan transfrags inferred with IFRAT

From: Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms

Organism № of TF in publication № of TF with hit in publication № of UTF > = 100 № of orphan UTF № of orphan UTF with blast hit № of bona fide UTF № of bona fide with blast hit
Hydra vulgaris 48909 17587 (36%) 44484 9806 (22%) 1086 (11.1%) 34717 15310 (44.1%)
Radix balthica 41590 7347 (17.7%) 38790 26846 (69%) 1360 (5.1%) 11944 6723 (56.3%)
Alipes grandidieri 66199 16688 (25.2%) 66297 31355 (47%) 1809 (5.8%) 34942 12253 (35.1%)
Cerebratulus marginatus 80865 11062 (13.7%) 81021 46345 (57%) 782 (1.7%) 34676 9995 (28.8%)
Chiton olivaceus 93879 24495 (26.1%) 93885 52461 (56%) 1692 (3.2%) 41424 11001 (26.6%)
Crella elegans 31703 13984 (44.1%) 31172 10930 (35%) 1364 (12.5%) 20242 7439 (36.8%)
Hormogaster samnitica 90928 25681 (28.2%) 90928 41271 (45%) 1003 (2.4%) 49657 15392 (31%)
Fagopyrum tataricum 25041 19072 (76.1%) 25040 5747 (23%) 1909 (33.2%) 19294 16326 (84.6%)