Table 5 Allocation of BLASTX hits between bona fide and orphan transfrags inferred with IFRAT
From: Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms
Organism | № of TF in publication | № of TF with hit in publication | № of UTF > = 100 | № of orphan UTF | № of orphan UTF with blast hit | № of bona fide UTF | № of bona fide with blast hit |
|---|---|---|---|---|---|---|---|
Hydra vulgaris | 48909 | 17587 (36%) | 44484 | 9806 (22%) | 1086 (11.1%) | 34717 | 15310 (44.1%) |
Radix balthica | 41590 | 7347 (17.7%) | 38790 | 26846 (69%) | 1360 (5.1%) | 11944 | 6723 (56.3%) |
Alipes grandidieri | 66199 | 16688 (25.2%) | 66297 | 31355 (47%) | 1809 (5.8%) | 34942 | 12253 (35.1%) |
Cerebratulus marginatus | 80865 | 11062 (13.7%) | 81021 | 46345 (57%) | 782 (1.7%) | 34676 | 9995 (28.8%) |
Chiton olivaceus | 93879 | 24495 (26.1%) | 93885 | 52461 (56%) | 1692 (3.2%) | 41424 | 11001 (26.6%) |
Crella elegans | 31703 | 13984 (44.1%) | 31172 | 10930 (35%) | 1364 (12.5%) | 20242 | 7439 (36.8%) |
Hormogaster samnitica | 90928 | 25681 (28.2%) | 90928 | 41271 (45%) | 1003 (2.4%) | 49657 | 15392 (31%) |
Fagopyrum tataricum | 25041 | 19072 (76.1%) | 25040 | 5747 (23%) | 1909 (33.2%) | 19294 | 16326 (84.6%) |