Skip to main content


Figure 1 | BMC Bioinformatics

Figure 1

From: DECODE: an integrated differential co-expression and differential expression analysis of gene expression data

Figure 1

Overview of DECODE. (i) Calculating DE for every gene. (ii) Consider every individual gene i in turn, calculating DC between gene i with every other genes. Genes are represented by nodes. Higher DC between a gene and gene i is illustrated using longer edge. (iii) Selecting optimal thresholds to define high/low DE and high/low DC based on chi-square maximization. Genes with higher DE are illustrated by shading with deeper red colour. (iv) Evaluate functional relevance of selected gene partitions based on functional gene sets.

Back to article page