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Figure 1 | BMC Bioinformatics

Figure 1

From: DECODE: an integrated differential co-expression and differential expression analysis of gene expression data

Figure 1

Overview of DECODE. (i) Calculating DE for every gene. (ii) Consider every individual gene i in turn, calculating DC between gene i with every other genes. Genes are represented by nodes. Higher DC between a gene and gene i is illustrated using longer edge. (iii) Selecting optimal thresholds to define high/low DE and high/low DC based on chi-square maximization. Genes with higher DE are illustrated by shading with deeper red colour. (iv) Evaluate functional relevance of selected gene partitions based on functional gene sets.

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BMC Bioinformatics

ISSN: 1471-2105

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