Fig. 5

The three type of plots affy2sv can draw on CytoScan samples to perform a visual QC. Plot A shows the log₂ of the intensities of both alleles for a single SNP across all the population. In the case, a random probe (A-4DTYM) was selected and drawn across the population diagnosed with intellectual disability (Dataset B). Plot B shows the values corresponding to the log₂ of the intensity of both alleles for all the probes in a random subject (3C136, from Dataset B). Plot C draws the strength and the contrast of all the probes for a random individual (3C136), being the strength log(A + B) and contrast (A-B)/(A + B)