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Fig. 3 | BMC Bioinformatics

Fig. 3

From: An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids

Fig. 3

Comparison of viral genome coverage using subsets of small RNA reads. a Percentage coverage of viral genomes by contigs assembled using 21–25 nt, 21–22 nt or 24 nt small RNAs. S1 = Vitis Vinifera; S2 = Prunus persica; S3 = Rubus idaeus; S9 = Miscanthus sinensis; S10 = Citrus medica; S12 = Citrus sp.; S17 = Pennisetum advena; S21 = Actinidia deliciosa; S22 = Nicotiana tabacum; GRSPaV = Grapevine rupestris stem pitting-associated virus; GVB = Grapevine virus B; GFkV = Grapevine fleck virus; GLRaV-3 = Grapevine leafroll-associated virus; HSVd = Hop stunt viroid; PNRSV = prunus necrotic ringspot virus; RBDV = Raspberry bushy dwarf virus; RYNV = Rubus yellow net virus; SPSMV-1 = Sweetpotato symptomless mastrevirus 1; SMoV = Strawberry mottle virus; SrMV = Sorghum moasaic virus; CTV = Citrus tristeza virus; CVd-VI = Citrus viroid VI; MCDV = Maize chlorotic dwarf virus; AcVB = Actinidia virus B; CTV = TVCV = Tobacco vein-clearing virus. b Mapping of high quality reads with no mismatches onto a reference grapevine fleck virus (GVFv)

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BMC Bioinformatics

ISSN: 1471-2105

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