Table 6 Comparison of average editing levels of detected RDDs on siADAR and siAPOBEC3 (siApo) treated HEK-293 cells
From: JACUSA: site-specific identification of RNA editing events from replicate sequencing data
RDDs in | Covered in | A→G | Avg. Editing level | |
|---|---|---|---|---|
Variant caller | gDNA vs. siApo | siADAR vs. siApo | Editing Sites | siADAR < siApo |
SAMtools/BCFtools | 6423 | 5066 (78.87%) | 4691 (92.60%) | 4630 (98.700%) |
MuTect | 4181 | 3415 (81.68%) | 3087 (90.40%) | 3043 (98.575%) |
REDItools | 6985 | 5823 (83.36%) | 5180 (88.96%) | 5099 (98.436%) |
JACUSA | 8722 | 7084 (81.22%) | 6466 (91.28%) | 6375 (98.593%) |